/***************************************************************************
 *   Copyright (C) 2007 by Alexandre Masselot,,,   *
 *   alex@alex-laptop   *
 *                                                                         *
 *   This program is free software; you can redistribute it and/or modify  *
 *   it under the terms of the GNU Library General Public License as       *
 *   published by the Free Software Foundation; either version 2 of the    *
 *   License, or (at your option) any later version.                       *
 *                                                                         *
 *   This program is distributed in the hope that it will be useful,       *
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of        *
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the         *
 *   GNU General Public License for more details.                          *
 *                                                                         *
 *   You should have received a copy of the GNU Library General Public     *
 *   License along with this program; if not, write to the                 *
 *   Free Software Foundation, Inc.,                                       *
 *   59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.             *
 ***************************************************************************/
#include "scoringmodelsharedpeakcount.h"

namespace bol {

  ScoringModelSharedPeakCount::ScoringModelSharedPeakCount()
  {
  }


  ScoringModelSharedPeakCount::~ScoringModelSharedPeakCount()
  {
  }
  void ScoringModelSharedPeakCount::init(){
  }

  
  double ScoringModelSharedPeakCount::score(const SpectraAlignment<PeakTheoMsms,PeakIntensity>& spalign){
    int cpt=0;
    for(int i=0; i<spalign.index().size(); i++){
      if(spalign.index()[i]>0){
        cpt++;
      }
    }
    return (double)cpt;
  }

  void ScoringModelSharedPeakCount::learn_init(){
  }
  void ScoringModelSharedPeakCount::learn_pushAlternate(const SpectraAlignment<PeakTheoMsms,PeakIntensity>& spalign){
  }
  void ScoringModelSharedPeakCount::learn_pushNull(const SpectraAlignment<PeakTheoMsms,PeakIntensity>& spalign){
  }
  void ScoringModelSharedPeakCount::learn_finalize(){
    //..................
  }

}
